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Furthermore, to use USB connection, a java library has to be compiled via ant. To do this perform cd /path/to/leJOS/build and start ant. If the ant build tool is not installed on your system, you can do so via sudo apt-get install ant.
On Linux there is on an issue that the NXT is found, but uploading any file to it does not progress after Found nxt <name>. Try to connect via bluetooth (-b option) if this is the case.
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