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For details on the objectives of our KLighD framework refer to have a look at the above mentioned publication Just Model! – Putting Automatic Synthesis of Node-Link-Diagrams into Practice (Sec. I, III, & V) first.
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Finally attach figure specifications to the nodes and edges, most conveniently by means of the extension methods provided by the ...Extension classes - see the use case example on that, too. A documentation of those methods in form of a list of all extension methods sorted by the type they can be used with can be found here. (And yes, there is still some lack of documentation...)
For convenience you might also want to import the examples project into your workspace. Simply switch to the Plug-ins view and import de.cau.cs.kieler.klighd.examples as Source Project.
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